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Structure of Pseudomonas aeruginosa LpxA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2M calcium acetate, 0.1M imidazole pH8.0, 20% PEG 1000
Crystal Properties Matthews coefficient Solvent content 2.13 42.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.031 α = 90 b = 82.176 β = 90 c = 220.515 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD RAYONIX MX300HS 2015-01-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.809 110.26 98.8 38.54 7.5 130011
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.81 110.26 122365 6531 97.91 0.18578 0.1844 0.21135 0.2081 RANDOM 24.365
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 0.24 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.908 r_dihedral_angle_4_deg 20.441 r_dihedral_angle_3_deg 12.845 r_dihedral_angle_1_deg 6.062 r_long_range_B_refined 6.033 r_long_range_B_other 6.023 r_scangle_other 4.793 r_angle_other_deg 3.657 r_scbond_it 3.171 r_scbond_other 3.171
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.908 r_dihedral_angle_4_deg 20.441 r_dihedral_angle_3_deg 12.845 r_dihedral_angle_1_deg 6.062 r_long_range_B_refined 6.033 r_long_range_B_other 6.023 r_scangle_other 4.793 r_angle_other_deg 3.657 r_scbond_it 3.171 r_scbond_other 3.171 r_mcangle_it 2.906 r_mcangle_other 2.906 r_mcbond_it 2.096 r_mcbond_other 2.095 r_angle_refined_deg 1.397 r_chiral_restr 0.089 r_gen_planes_other 0.031 r_gen_planes_refined 0.015 r_bond_refined_d 0.012 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11790 Nucleic Acid Atoms Solvent Atoms 816 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling SCALEPACK data scaling