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Influenza C Virus RNA-dependent RNA Polymerase - Space group P43212
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 Drops were set up by mixing polymerase (5.8 mg/ml in 25 mM Hepes:NaOH, pH 7.5, 10% (v/v) glycerol, 0.5 M NaCl, 0.5 mM TCEP, 10 mM CaCl2) with 70% Morpheus G2 (10% w/v PEG 8000, 20% v/v ethylene glycol, 0.02 M carboxylic acids (0.2 M sodium formate, 0.2 M ammonium acetate, 0.2 M trisodium citrate, 0.2 M sodium potassium l-tartrate, 0.2 M sodium oxamate), 0.1 M MES/imidazole) in a 2:1 protein:precipitant ratio.
Crystal Properties Matthews coefficient Solvent content 5.21 76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 185.66 α = 90 b = 185.66 β = 90 c = 598.22 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-02-02 M SINGLE WAVELENGTH 2 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03 2 SYNCHROTRON DIAMOND BEAMLINE I03 1.0350 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.9 100.57 98.8 0.201 13.2 21.2 95267
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.9 4 96.9 3.685 1.3 20.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 3.9 50.01 90335 4770 98.75 0.2878 0.28578 0.2858 0.32572 0.3231 RANDOM 205.572
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.73 9.73 -19.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.493 r_long_range_B_refined 21.756 r_long_range_B_other 21.756 r_dihedral_angle_3_deg 16.506 r_mcangle_it 15.746 r_mcangle_other 15.745 r_scangle_other 15.141 r_dihedral_angle_4_deg 10.461 r_mcbond_it 9.63 r_mcbond_other 9.629
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.493 r_long_range_B_refined 21.756 r_long_range_B_other 21.756 r_dihedral_angle_3_deg 16.506 r_mcangle_it 15.746 r_mcangle_other 15.745 r_scangle_other 15.141 r_dihedral_angle_4_deg 10.461 r_mcbond_it 9.63 r_mcbond_other 9.629 r_scbond_it 9.077 r_scbond_other 9.077 r_dihedral_angle_1_deg 5.663 r_angle_other_deg 1.679 r_angle_refined_deg 1.116 r_chiral_restr 0.052 r_bond_refined_d 0.008 r_bond_other_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 34716 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement xia2 data reduction PHENIX phasing SHELX phasing Aimless data scaling