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Structure of coiled coil domain of Leishmania donovani coronin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 279 3 ul of 8 mg/ml purified protein + 3 ul of reservoir solution (0.85M Ammonium Sulphate, 0.8M Lithium Sulphate, 10mM Sodium Citrate) equilibrated against 1ml reservoir. Crystals appeared in 7 - 10 days.
Crystal Properties Matthews coefficient Solvent content 2.57 52.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.39 α = 90 b = 48.78 β = 110.95 c = 45.35 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-02-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.9785 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 50 87.3 0.118 6.9 6.4 14275
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.97 2.04 40.8 3.5 661
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.21 42.35 10966 589 98.29 0.23603 0.23293 0.2351 0.28885 0.2881 RANDOM 40.616
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 1.03 0.66 -0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.603 r_sphericity_bonded 35.568 r_dihedral_angle_4_deg 28.561 r_sphericity_free 26.584 r_dihedral_angle_3_deg 17.127 r_rigid_bond_restr 14.701 r_long_range_B_refined 9.145 r_scbond_it 8.567 r_mcangle_it 6.884 r_mcbond_it 5.776
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.603 r_sphericity_bonded 35.568 r_dihedral_angle_4_deg 28.561 r_sphericity_free 26.584 r_dihedral_angle_3_deg 17.127 r_rigid_bond_restr 14.701 r_long_range_B_refined 9.145 r_scbond_it 8.567 r_mcangle_it 6.884 r_mcbond_it 5.776 r_dihedral_angle_1_deg 4.688 r_angle_refined_deg 1.369 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1590 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling SOLVE phasing PDB_EXTRACT data extraction HKL-2000 data reduction