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Crystal structure of yeast acetyl-CoA carboxylase, unbiotinylated
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5CS0 5CS0, 5CS4, and 5CSA plus unpublished BC and CT domain structures experimental model PDB 5CS4 5CS0, 5CS4, and 5CSA plus unpublished BC and CT domain structures experimental model PDB 5CSA 5CS0, 5CS4, and 5CSA plus unpublished BC and CT domain structures
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.3 293 14% (w/v) PEG3350, 4% (v/v) tert-butanol, and 0.2 M sodium citrate
Crystal Properties Matthews coefficient Solvent content 3.95 68.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 159.879 α = 90 b = 159.879 β = 90 c = 615.49 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-07-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.100 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 50 93.1 0.109 0.127 0.085 6.4 2.3 136014
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.21 90.5 0.881 0.68 0.452 2.3 13007
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT AC1-2 AC3-5 BT-BCCP-AC1-5 3.1 49.47 129166 6831 93.05 0.2199 0.2167 0.2808 0.2676 RANDOM 92.666
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.58 2.58 -5.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.844 r_dihedral_angle_3_deg 17.686 r_dihedral_angle_4_deg 17.628 r_dihedral_angle_1_deg 6.403 r_angle_refined_deg 1.494 r_angle_other_deg 0.814 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.844 r_dihedral_angle_3_deg 17.686 r_dihedral_angle_4_deg 17.628 r_dihedral_angle_1_deg 6.403 r_angle_refined_deg 1.494 r_angle_other_deg 0.814 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 31806 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling PHASER phasing Coot model building PDB_EXTRACT data extraction DENZO data reduction