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Crystal Structure of the MTERF1 F243A substitution bound to the termination sequence.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MVA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 0.2M Sodium Acetate, 0.1M Tris HCl pH 8.0, 15% Peg 4000
Crystal Properties Matthews coefficient Solvent content 3.13 60.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.743 α = 90 b = 89.375 β = 90 c = 159.91 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.0 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.48 79.96 99.6 0.035 34.1 7.3 22892
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.48 2.77 100 0.469 4 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3MVA 2.48 79.96 21690 1169 99.5 0.2365 0.2347 0.239 0.2711 0.2769 RANDOM 68.473
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.09 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.559 r_dihedral_angle_4_deg 20.507 r_dihedral_angle_3_deg 15.293 r_mcangle_it 8.319 r_mcbond_it 5.967 r_mcbond_other 5.948 r_dihedral_angle_1_deg 5.845 r_angle_other_deg 1.926 r_angle_refined_deg 1.574 r_chiral_restr 0.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.559 r_dihedral_angle_4_deg 20.507 r_dihedral_angle_3_deg 15.293 r_mcangle_it 8.319 r_mcbond_it 5.967 r_mcbond_other 5.948 r_dihedral_angle_1_deg 5.845 r_angle_other_deg 1.926 r_angle_refined_deg 1.574 r_chiral_restr 0.089 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.004 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2587 Nucleic Acid Atoms 896 Solvent Atoms 1 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction MOLREP phasing