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Novel fungal alcohol oxidase with catalytic diversity among the AA5 family, apo form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2EIE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 0.1 M imidazole, pH 8.0, 12% v/v polyethylene glycol 8.000 and 4.5% 1-butanol.
Crystal Properties Matthews coefficient Solvent content 2.22 44.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.71 α = 90 b = 123.71 β = 90 c = 52.64 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.979 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.51 52.64 99.9 0.079 0.027 18.1 9.9 72213 72213
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.51 1.55 99.8 0.794 3.5 10
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2eie 1.51 40.53 68603 3581 99.93 0.15207 0.15047 0.1605 0.1832 0.1899 RANDOM 18.419
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.79 -0.39 -0.79 2.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.517 r_dihedral_angle_4_deg 18.089 r_dihedral_angle_3_deg 12.279 r_dihedral_angle_1_deg 7.167 r_long_range_B_refined 4.719 r_long_range_B_other 4.545 r_scangle_other 3.484 r_scbond_it 2.418 r_scbond_other 2.418 r_mcangle_it 2.199
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.517 r_dihedral_angle_4_deg 18.089 r_dihedral_angle_3_deg 12.279 r_dihedral_angle_1_deg 7.167 r_long_range_B_refined 4.719 r_long_range_B_other 4.545 r_scangle_other 3.484 r_scbond_it 2.418 r_scbond_other 2.418 r_mcangle_it 2.199 r_mcangle_other 2.199 r_angle_refined_deg 2.079 r_mcbond_it 1.633 r_mcbond_other 1.63 r_angle_other_deg 1.104 r_chiral_restr 0.127 r_bond_refined_d 0.022 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3624 Nucleic Acid Atoms Solvent Atoms 403 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing