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Fragment-Based Drug Discovery Targeting Inhibitor of Apoptosis Proteins: Compound 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 3.9M NaCl, 0.1M HEPES/NaOHpH=7.5
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.571 α = 90 b = 71.571 β = 90 c = 105.666 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2008-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 .9834 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.59 71.57 99.5 0.071 7.8 3.6 8972 8972 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.59 2.63 99.5 0.335 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.6 71.57 8443 473 99.38 0.20144 0.19979 0.2 0.23234 0.2324 RANDOM 45.118
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 0.66 -1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.855 r_dihedral_angle_3_deg 18.622 r_dihedral_angle_4_deg 12.281 r_long_range_B_refined 11.434 r_dihedral_angle_1_deg 5.319 r_scbond_it 4.393 r_scbond_other 4.388 r_mcbond_it 2.528 r_angle_refined_deg 1.419 r_angle_other_deg 0.188
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.855 r_dihedral_angle_3_deg 18.622 r_dihedral_angle_4_deg 12.281 r_long_range_B_refined 11.434 r_dihedral_angle_1_deg 5.319 r_scbond_it 4.393 r_scbond_other 4.388 r_mcbond_it 2.528 r_angle_refined_deg 1.419 r_angle_other_deg 0.188 r_chiral_restr 0.118 r_bond_refined_d 0.011 r_bond_other_d 0.009 r_gen_planes_refined r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 866 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement