☰ Navigation Tabs
HLA-A02 carrying YLGGPDFPTI
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UTQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1M TRIS pH8, 25% PEG 4000, 15% glycerol
Crystal Properties Matthews coefficient Solvent content 2.54 51.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.07 α = 90 b = 79.74 β = 115.74 c = 57 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9763 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 31.294 99 0.085 0.113 0.055 12.2 3.9 72820 72820
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.53 98.4 1.074 1.074 0.617 0.4 4 5329
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3UTQ 1.491 31.29 69115 3669 99 0.157 0.1558 0.1644 0.1786 0.1867 RANDOM 19.601
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.38 -0.33 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.193 r_dihedral_angle_4_deg 20.724 r_dihedral_angle_3_deg 13.52 r_dihedral_angle_1_deg 6.645 r_angle_refined_deg 2.359 r_mcangle_it 2.051 r_mcbond_it 1.216 r_mcbond_other 1.216 r_angle_other_deg 0.992 r_chiral_restr 0.124
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.193 r_dihedral_angle_4_deg 20.724 r_dihedral_angle_3_deg 13.52 r_dihedral_angle_1_deg 6.645 r_angle_refined_deg 2.359 r_mcangle_it 2.051 r_mcbond_it 1.216 r_mcbond_other 1.216 r_angle_other_deg 0.992 r_chiral_restr 0.124 r_bond_refined_d 0.021 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3182 Nucleic Acid Atoms Solvent Atoms 391 Heterogen Atoms 236
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction