X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3UTP3UTP and 3UTQ
experimental modelPDB 3UTQ3UTP and 3UTQ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2910.1M HEPES pH7.5, 15% PEG 4000, 0.2M sodium acetate
Crystal Properties
Matthews coefficientSolvent content
2.7755.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.88α = 96.67
b = 100.02β = 98.58
c = 123.28γ = 95.8
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2012-03-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.97630DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4631.23697.70.0880.1020.0674.71.97253472534
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.462.5296.20.2140.2140.3813.11.85249

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3UTP and 3UTQ2.4631.23668868365597.730.19480.19280.2317RANDOM67.984
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.040.45-0.530.51.64-1.81
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.155
r_dihedral_angle_3_deg19.663
r_dihedral_angle_4_deg18.253
r_dihedral_angle_1_deg7.784
r_mcangle_it3.133
r_mcbond_it1.968
r_mcbond_other1.968
r_angle_refined_deg1.713
r_angle_other_deg1.147
r_chiral_restr0.106
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.155
r_dihedral_angle_3_deg19.663
r_dihedral_angle_4_deg18.253
r_dihedral_angle_1_deg7.784
r_mcangle_it3.133
r_mcbond_it1.968
r_mcbond_other1.968
r_angle_refined_deg1.713
r_angle_other_deg1.147
r_chiral_restr0.106
r_bond_refined_d0.014
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13397
Nucleic Acid Atoms
Solvent Atoms170
Heterogen Atoms122

Software

Software
Software NamePurpose
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction