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1E6 TCR in complex with HLA-A02 carrying MVW peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UTP 3UTP and 3UTQ experimental model PDB 3UTQ 3UTP and 3UTQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1M HEPES pH7.5, 15% PEG 4000, 0.2M sodium acetate
Crystal Properties Matthews coefficient Solvent content 2.77 55.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.88 α = 96.67 b = 100.02 β = 98.58 c = 123.28 γ = 95.8
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97630 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.46 31.236 97.7 0.088 0.102 0.067 4.7 1.9 72534 72534
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.52 96.2 0.214 0.214 0.381 3.1 1.8 5249
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3UTP and 3UTQ 2.46 31.236 68868 3655 97.73 0.1948 0.1928 0.1959 0.2317 0.2358 RANDOM 67.984
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.04 0.45 -0.53 0.5 1.64 -1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.155 r_dihedral_angle_3_deg 19.663 r_dihedral_angle_4_deg 18.253 r_dihedral_angle_1_deg 7.784 r_mcangle_it 3.133 r_mcbond_it 1.968 r_mcbond_other 1.968 r_angle_refined_deg 1.713 r_angle_other_deg 1.147 r_chiral_restr 0.106
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.155 r_dihedral_angle_3_deg 19.663 r_dihedral_angle_4_deg 18.253 r_dihedral_angle_1_deg 7.784 r_mcangle_it 3.133 r_mcbond_it 1.968 r_mcbond_other 1.968 r_angle_refined_deg 1.713 r_angle_other_deg 1.147 r_chiral_restr 0.106 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13397 Nucleic Acid Atoms Solvent Atoms 170 Heterogen Atoms 122
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction