☰ Navigation Tabs
ERK5 IN COMPLEX WITH SMALL MOLECULE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.01 M Tris 8.50
0.01 M MgCl2
13 % PEG4000
0.18 M Na-formiate
0.10 M MES, pH=6.50
Crystal Properties Matthews coefficient Solvent content 2.97 58.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.791 α = 90 b = 92.791 β = 90 c = 107.321 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.00003 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.79 70.19 99.9 0.069 21.7 5.9 12141
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.79 3.04 100 0.44 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.79 70.19 11433 692 99.87 0.22342 0.22059 0.2218 0.27285 0.264 RANDOM 19.315
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.69 1.69 -3.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.461 r_dihedral_angle_4_deg 18.762 r_dihedral_angle_3_deg 13.02 r_dihedral_angle_1_deg 4.793 r_scangle_it 3.827 r_scbond_it 2.397 r_mcangle_it 1.744 r_angle_other_deg 1.359 r_angle_refined_deg 1.073 r_mcbond_it 0.932
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.461 r_dihedral_angle_4_deg 18.762 r_dihedral_angle_3_deg 13.02 r_dihedral_angle_1_deg 4.793 r_scangle_it 3.827 r_scbond_it 2.397 r_mcangle_it 1.744 r_angle_other_deg 1.359 r_angle_refined_deg 1.073 r_mcbond_it 0.932 r_mcbond_other 0.103 r_chiral_restr 0.058 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2730 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 35
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement MOLREP phasing