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Crystal structure of RbcX-IIa from Chlamydomonas reinhardtii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 5 % PEG-3350, 0.2 M MgCl2, 50 mM Tris-HCl pH 8.0
Crystal Properties Matthews coefficient Solvent content 1.93 36.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.133 α = 76.49 b = 52.989 β = 81.1 c = 61.561 γ = 70.1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-06-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97900 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.498 48.87 84.2 0.049 0.087 0.053 10.7 2.4 56366 56366
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.498 1.58 36.8 0.308 0.308 0.273 2.4 2 3499
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 30 49112 2585 94.09 0.1787 0.1772 0.1741 0.206 0.2007 RANDOM 18.804
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.83 0.37 -0.04 -0.13 0.04 -0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.21 r_dihedral_angle_4_deg 22.234 r_dihedral_angle_3_deg 10.948 r_dihedral_angle_1_deg 4.926 r_angle_refined_deg 1.509 r_angle_other_deg 1.413 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.21 r_dihedral_angle_4_deg 22.234 r_dihedral_angle_3_deg 10.948 r_dihedral_angle_1_deg 4.926 r_angle_refined_deg 1.509 r_angle_other_deg 1.413 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.007 r_gen_planes_other 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3658 Nucleic Acid Atoms Solvent Atoms 388 Heterogen Atoms 1
Software Software Software Name Purpose SCALA data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction