X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.42930.1 M Tris-HCl, 0.825 M sodium citrate
Crystal Properties
Matthews coefficientSolvent content
2.5952.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.61α = 90
b = 60.95β = 102.36
c = 118.21γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42013-11-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12A1.00000Photon FactoryAR-NW12A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.745.5696.414.73.317279

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.7101606084494.260.225410.221220.30664RANDOM47.528
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.890.594.1-2.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.144
r_dihedral_angle_4_deg20.846
r_dihedral_angle_3_deg17.863
r_long_range_B_refined5.83
r_long_range_B_other5.824
r_dihedral_angle_1_deg4.811
r_scangle_other4.121
r_mcangle_it4.041
r_mcangle_other4.04
r_scbond_it2.681
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.144
r_dihedral_angle_4_deg20.846
r_dihedral_angle_3_deg17.863
r_long_range_B_refined5.83
r_long_range_B_other5.824
r_dihedral_angle_1_deg4.811
r_scangle_other4.121
r_mcangle_it4.041
r_mcangle_other4.04
r_scbond_it2.681
r_scbond_other2.68
r_mcbond_it2.622
r_mcbond_other2.622
r_angle_refined_deg1.366
r_angle_other_deg1.019
r_chiral_restr0.066
r_bond_refined_d0.011
r_bond_other_d0.007
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3955
Nucleic Acid Atoms
Solvent Atoms86
Heterogen Atoms50

Software

Software
Software NamePurpose
REFMACrefinement