X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.92930.1M HEPES, 35% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.2545.22

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.46α = 90
b = 59.46β = 90
c = 317.94γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42015-06-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12A1.00000Photon FactoryAR-NW12A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.4547.6198.515.610.58185

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT3.4511740840094.460.255370.252540.30763RANDOM31.093
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.510.51-1.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.651
r_dihedral_angle_4_deg20.95
r_dihedral_angle_3_deg19.142
r_dihedral_angle_1_deg4.777
r_long_range_B_refined4.276
r_long_range_B_other4.276
r_scangle_other2.359
r_angle_other_deg2.124
r_mcangle_it2.105
r_mcangle_other2.104
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.651
r_dihedral_angle_4_deg20.95
r_dihedral_angle_3_deg19.142
r_dihedral_angle_1_deg4.777
r_long_range_B_refined4.276
r_long_range_B_other4.276
r_scangle_other2.359
r_angle_other_deg2.124
r_mcangle_it2.105
r_mcangle_other2.104
r_scbond_it1.564
r_scbond_other1.562
r_angle_refined_deg1.257
r_mcbond_it1.217
r_mcbond_other1.215
r_chiral_restr0.071
r_bond_refined_d0.007
r_gen_planes_refined0.005
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4046
Nucleic Acid Atoms
Solvent Atoms24
Heterogen Atoms50

Software

Software
Software NamePurpose
REFMACrefinement