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Cu(I)-CSP3 (COPPER STORAGE PROTEIN 3) FROM METHYLOSINUS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ARM PDB ENTRY 5ARM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 75 MM MGCL2, 100 MM HEPES PH 7.5, AND 34% PEG 400
Crystal Properties Matthews coefficient Solvent content 2.51 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.902 α = 90 b = 105.902 β = 90 c = 45.63 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 41.91 99.7 0.08 6.3 4.1 5998 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 99.9 0.65 1.9 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 5ARM 2.3 74.88 5534 306 96.98 0.18912 0.18573 0.2008 0.24274 0.2324 RANDOM 50.733
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.14 2.14 -4.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.731 r_dihedral_angle_3_deg 14.792 r_dihedral_angle_4_deg 14.265 r_dihedral_angle_1_deg 5.688 r_mcangle_it 4.876 r_scbond_it 4.102 r_mcbond_it 3.534 r_mcbond_other 3.534 r_angle_refined_deg 1.494 r_angle_other_deg 1.025
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.731 r_dihedral_angle_3_deg 14.792 r_dihedral_angle_4_deg 14.265 r_dihedral_angle_1_deg 5.688 r_mcangle_it 4.876 r_scbond_it 4.102 r_mcbond_it 3.534 r_mcbond_other 3.534 r_angle_refined_deg 1.494 r_angle_other_deg 1.025 r_chiral_restr 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 838 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing