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APO-CSP3 (COPPER STORAGE PROTEIN 3) FROM METHYLOSINUS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KAW PDB ENTRY 3KAW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 40% PENTAERYTHRITOL PROPOXYLATE (5/4 PO/OH), 100 MM HEPES PH 7 AND 200 MM SODIUM THIOCYANATE
Crystal Properties Matthews coefficient Solvent content 1.95 37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.17 α = 90 b = 105.5 β = 90 c = 45.07 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.19 34.27 98.7 0.05 8.5 3.3 34091 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.19 1.21 99.1 0.44 2.2 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3KAW 1.194 52.75 34049 1721 98.291 0.138 0.1365 0.1462 0.171 0.1759 RANDOM 15.938
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.131 -0.062 -0.068
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.354 r_sphericity_free 20.388 r_dihedral_angle_4_deg 19.788 r_dihedral_angle_3_deg 14.549 r_sphericity_bonded 10.429 r_dihedral_angle_1_deg 4.094 r_scangle_it 3.476 r_rigid_bond_restr 3.426 r_scbond_it 2.902 r_mcangle_it 2.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.354 r_sphericity_free 20.388 r_dihedral_angle_4_deg 19.788 r_dihedral_angle_3_deg 14.549 r_sphericity_bonded 10.429 r_dihedral_angle_1_deg 4.094 r_scangle_it 3.476 r_rigid_bond_restr 3.426 r_scbond_it 2.902 r_mcangle_it 2.122 r_mcbond_it 2.042 r_angle_refined_deg 1.885 r_mcbond_other 1.731 r_angle_other_deg 1.108 r_nbd_refined 0.269 r_nbd_other 0.184 r_nbtor_refined 0.174 r_chiral_restr 0.114 r_xyhbond_nbd_refined 0.068 r_xyhbond_nbd_other 0.045 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 942 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling MOLREP phasing