X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4UW7PDB ENTRY 4UW7

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.50.1 M TRIS-HCL PH 8.5, 8% (W/V) PEG 4000, 10 MM IRON(III) CHLORIDE, 20% (V/V) GLYCEROL
Crystal Properties
Matthews coefficientSolvent content
2.2244.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 86.623α = 68.24
b = 95.029β = 70.2
c = 127.748γ = 83.63
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MVERTICAL FOCUSING MIRROR AND HORIZONTAL FOCUSING MIRROR ORTHOGONAL IN A KIRKPATRICK-BAEZ CONFIGURATION2014-12-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALBA BEAMLINE XALOCALBAXALOC

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.32391.30.087.62.4144381
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.4290.50.2132.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4UW72.323140892290690.870.223540.222970.25228THIN SHELLS62.601
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.662.03-2.162.54-1.05-2.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.56
r_dihedral_angle_3_deg12.454
r_dihedral_angle_4_deg9.48
r_dihedral_angle_1_deg7.128
r_angle_refined_deg1.326
r_mcangle_it1.044
r_scangle_it1.038
r_scbond_it0.62
r_mcbond_it0.596
r_symmetry_vdw_refined0.354
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.56
r_dihedral_angle_3_deg12.454
r_dihedral_angle_4_deg9.48
r_dihedral_angle_1_deg7.128
r_angle_refined_deg1.326
r_mcangle_it1.044
r_scangle_it1.038
r_scbond_it0.62
r_mcbond_it0.596
r_symmetry_vdw_refined0.354
r_symmetry_hbond_refined0.303
r_nbtor_refined0.289
r_nbd_refined0.167
r_xyhbond_nbd_refined0.087
r_chiral_restr0.08
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms24486
Nucleic Acid Atoms
Solvent Atoms858
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing