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Crystal structure of CDK2 in complex with N-(9H-purin-6-yl)thiophene- 2-carboxamide processed with the CrystalDirect automated mounting and cryo-cooling technology
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.02 M HEPES, PH=7.0, 5% GLYCEROL, 12% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.03 39.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.67 α = 90 b = 71.215 β = 90 c = 72.234 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 100 0.07 6.5 37295 2.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.6 29.67 35378 1859 99.96 0.1982 0.19651 0.196 0.22919 0.231 RANDOM 25.249
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.98 4.62 -6.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.428 r_dihedral_angle_4_deg 15.805 r_dihedral_angle_3_deg 14.308 r_dihedral_angle_1_deg 5.982 r_scbond_it 4.215 r_mcangle_it 4.034 r_mcbond_it 2.805 r_mcbond_other 2.792 r_angle_refined_deg 2.188 r_angle_other_deg 1.047
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.428 r_dihedral_angle_4_deg 15.805 r_dihedral_angle_3_deg 14.308 r_dihedral_angle_1_deg 5.982 r_scbond_it 4.215 r_mcangle_it 4.034 r_mcbond_it 2.805 r_mcbond_other 2.792 r_angle_refined_deg 2.188 r_angle_other_deg 1.047 r_chiral_restr 0.149 r_bond_refined_d 0.024 r_gen_planes_refined 0.012 r_bond_other_d 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2336 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement