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Geotrichum candidum Cel7A apo structure at 2.1A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GPI PDB ENTRY 1GPI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.9 0.2M MAGNESIUM CHLORIDE HEXAHYDRATE, 20% PEG 3350, pH 5.9
Crystal Properties Matthews coefficient Solvent content 2.02 39.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.88 α = 90 b = 90.56 β = 109.86 c = 55.27 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CHESS MIRRORS 2012-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 51.98 95.5 0.06 13.9 3.7 24567 13.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.11 2.14 75.1 0.55 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GPI 2.12 51.98 20845 1125 97.83 0.14863 0.14614 0.1565 0.19415 0.1966 RANDOM 13.941
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.19 0.83 -0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.037 r_dihedral_angle_4_deg 21.78 r_dihedral_angle_3_deg 10.949 r_dihedral_angle_1_deg 5.994 r_long_range_B_refined 3.944 r_long_range_B_other 3.457 r_angle_refined_deg 1.077 r_mcangle_it 0.905 r_mcangle_other 0.905 r_scangle_other 0.793
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.037 r_dihedral_angle_4_deg 21.78 r_dihedral_angle_3_deg 10.949 r_dihedral_angle_1_deg 5.994 r_long_range_B_refined 3.944 r_long_range_B_other 3.457 r_angle_refined_deg 1.077 r_mcangle_it 0.905 r_mcangle_other 0.905 r_scangle_other 0.793 r_angle_other_deg 0.727 r_mcbond_it 0.493 r_mcbond_other 0.493 r_scbond_it 0.456 r_scbond_other 0.456 r_chiral_restr 0.065 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3259 Nucleic Acid Atoms Solvent Atoms 467 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling CCP4 phasing