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Sdsa sulfatase tetragonal
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CG3 PDB ENTRY 2CG3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 12% PEG 4000, 10% ISOPROPANOL, 200 MM LICL, 100 MM CITRATE BUFFER PH 6.0.
Crystal Properties Matthews coefficient Solvent content 2.7 53.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.58 α = 90 b = 88.58 β = 90 c = 193.93 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2013-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.48 20 97.6 0.1 12.11 5 18672 1.65
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.48 3.68 88.9 0.83 1.65 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CG3 3.45 52.61 18616 1005 99.77 0.24638 0.24411 0.2483 0.28901 0.29 RANDOM 130.155
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.99 -0.99 1.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.409 r_dihedral_angle_3_deg 18.204 r_dihedral_angle_4_deg 17.604 r_dihedral_angle_1_deg 6.797 r_long_range_B_refined 2.571 r_long_range_B_other 2.571 r_mcangle_it 1.278 r_mcangle_other 1.278 r_angle_refined_deg 1.252 r_scangle_other 1.062
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.409 r_dihedral_angle_3_deg 18.204 r_dihedral_angle_4_deg 17.604 r_dihedral_angle_1_deg 6.797 r_long_range_B_refined 2.571 r_long_range_B_other 2.571 r_mcangle_it 1.278 r_mcangle_other 1.278 r_angle_refined_deg 1.252 r_scangle_other 1.062 r_angle_other_deg 0.973 r_mcbond_it 0.713 r_mcbond_other 0.713 r_scbond_it 0.572 r_scbond_other 0.572 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9842 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing