☰ Navigation Tabs
human aldehyde dehydrogenase 1A1 with duocarmycin analog
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4X4L PDB ENTRY 4X4L
Crystallization Crystal Properties Matthews coefficient Solvent content 2.25 31.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.123 α = 90 b = 109.123 β = 90 c = 83.175 γ = 90
Symmetry Space Group P 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 109.1 99.78 0.1882 17.78 26 43648
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.91 98.08 2.7 1.2 26.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4X4L 1.85 48.8 41466 2182 99.76 0.20191 0.19927 0.2473 0.25122 0.2863 RANDOM 41.726
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.83 -0.83 1.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.965 r_dihedral_angle_4_deg 20.223 r_dihedral_angle_3_deg 15.481 r_dihedral_angle_1_deg 6.734 r_scbond_it 3.096 r_mcangle_it 3.08 r_mcbond_it 2.445 r_mcbond_other 2.445 r_angle_refined_deg 1.9 r_angle_other_deg 0.865
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.965 r_dihedral_angle_4_deg 20.223 r_dihedral_angle_3_deg 15.481 r_dihedral_angle_1_deg 6.734 r_scbond_it 3.096 r_mcangle_it 3.08 r_mcbond_it 2.445 r_mcbond_other 2.445 r_angle_refined_deg 1.9 r_angle_other_deg 0.865 r_chiral_restr 0.105 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3816 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms 69
Software Software Software Name Purpose REFMAC refinement XDS data reduction PHASER phasing