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Crystal structure of AtTTM3 in complex with tripolyphosphate and magnesium ion (form A)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 2.2 M NACL, 0.1 M CITRIC ACID/NAOH PH 5.0
Crystal Properties Matthews coefficient Solvent content 3.44 64.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.334 α = 90 b = 136.334 β = 90 c = 144.202 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 45.33 98.5 0.08 20.06 10.59 49737 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 2.04 90.8 1.21 2.18 8.35
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT NONE 1.92 45.37 46150 4713 98.46 0.15734 0.15314 0.1534 0.19827 0.1984 RANDOM 39.118
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 0.35 -0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.771 r_sphericity_free 29.515 r_sphericity_bonded 18.709 r_dihedral_angle_4_deg 13.897 r_dihedral_angle_3_deg 12.919 r_dihedral_angle_1_deg 5.933 r_scbond_it 3.179 r_mcangle_it 2.569 r_mcbond_it 1.873 r_angle_refined_deg 1.268
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.771 r_sphericity_free 29.515 r_sphericity_bonded 18.709 r_dihedral_angle_4_deg 13.897 r_dihedral_angle_3_deg 12.919 r_dihedral_angle_1_deg 5.933 r_scbond_it 3.179 r_mcangle_it 2.569 r_mcbond_it 1.873 r_angle_refined_deg 1.268 r_rigid_bond_restr 0.988 r_chiral_restr 0.078 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3404 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHELXD phasing SHARP phasing RESOLVE phasing