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Crystal structure of BPSL1147, a PC4 homolog from Burkholderia pseudomallei K96243 (orthorhombic crystal form)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other TETRAGONAL CRYSTAL FORM OF THE SAME PROTEIN, HOMODIMER
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 277 20 MM TRIS/HCL PH 9.0, 600 MM KCL, TEMPERATURE 277 K
Crystal Properties Matthews coefficient Solvent content 1.8 32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.374 α = 90 b = 50.149 β = 90 c = 63.533 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2012-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 39.4 99.7 0.12 14.3 7.1 12701 -3 25.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.86 98 1.02 2 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT TETRAGONAL CRYSTAL FORM OF THE SAME PROTEIN, HOMODIMER 1.76 39.36 11449 1252 99.65 0.19614 0.19126 0.2001 0.24092 0.2403 RANDOM 21.059
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.17 0.55 0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.969 r_dihedral_angle_3_deg 14.874 r_dihedral_angle_4_deg 14.786 r_dihedral_angle_1_deg 6.79 r_angle_other_deg 3.617 r_mcangle_it 2.857 r_scbond_it 1.983 r_mcbond_it 1.727 r_mcbond_other 1.727 r_angle_refined_deg 1.699
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.969 r_dihedral_angle_3_deg 14.874 r_dihedral_angle_4_deg 14.786 r_dihedral_angle_1_deg 6.79 r_angle_other_deg 3.617 r_mcangle_it 2.857 r_scbond_it 1.983 r_mcbond_it 1.727 r_mcbond_other 1.727 r_angle_refined_deg 1.699 r_chiral_restr 0.109 r_bond_refined_d 0.013 r_gen_planes_other 0.01 r_gen_planes_refined 0.007 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1169 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing