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Crystal structure of mtPAP N472D mutant in complex with ATPgammaS
Crystallization Crystal Properties Matthews coefficient Solvent content 2.17 43.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.232 α = 90 b = 95.22 β = 90 c = 190.514 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 PIXEL DECTRIS PILATUS 2M-F M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 40 99.9 0.14 0.99 15 10 29303 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.9 100 0.57 1.7 10.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NONE 2.75 39.75 27694 1484 99.59 0.24894 0.24689 0.247 0.28716 0.2855 RANDOM 67.509
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 2.44 -2.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.793 r_dihedral_angle_3_deg 13.848 r_dihedral_angle_4_deg 13.579 r_dihedral_angle_1_deg 5.27 r_mcangle_it 4.284 r_mcbond_it 2.602 r_mcbond_other 2.602 r_scbond_it 2.36 r_angle_refined_deg 0.976 r_angle_other_deg 0.767
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.793 r_dihedral_angle_3_deg 13.848 r_dihedral_angle_4_deg 13.579 r_dihedral_angle_1_deg 5.27 r_mcangle_it 4.284 r_mcbond_it 2.602 r_mcbond_other 2.602 r_scbond_it 2.36 r_angle_refined_deg 0.976 r_angle_other_deg 0.767 r_chiral_restr 0.053 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7288 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement MOLREP phasing