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STRUCTURE OF CUTC CHOLINE LYASE CHOLINE FREE FORM FROM KLEBSIELLA PNEUMONIAE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5A0U PDB ENTRY 5A0U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 20% PEG 3350, 100-160 MM K/NA TARTRATE, 100 MM BIS-TRIS, PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.64 53.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.6 α = 90 b = 154.55 β = 96.85 c = 120.78 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX BONDED TO FIBER-OPTIC TAPERS MIRRORS 2015-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 61.78 89.3 0.11 5.2 1.8 66881 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.16 76.2 0.38 1.9 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 5A0U 3 119.92 63518 3342 88.47 0.23501 0.23232 0.2345 0.28598 0.2845 RANDOM 37.544
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1 -0.39 1.48 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.636 r_dihedral_angle_3_deg 21.734 r_dihedral_angle_4_deg 20.047 r_dihedral_angle_1_deg 8.765 r_angle_other_deg 3.821 r_mcangle_it 3.138 r_mcbond_it 1.819 r_mcbond_other 1.819 r_angle_refined_deg 1.721 r_scbond_it 1.334
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.636 r_dihedral_angle_3_deg 21.734 r_dihedral_angle_4_deg 20.047 r_dihedral_angle_1_deg 8.765 r_angle_other_deg 3.821 r_mcangle_it 3.138 r_mcbond_it 1.819 r_mcbond_other 1.819 r_angle_refined_deg 1.721 r_scbond_it 1.334 r_chiral_restr 0.11 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23177 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling MOLREP phasing