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Neurospora crassa cobalamin-independent methionine synthase complexed with Zn2+
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 22% w/v PEG3350, 150 mM potassium nitrate, 1 mM DTT, 20% v/v glycerol
Crystal Properties Matthews coefficient Solvent content 2.46 50.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.254 α = 90 b = 94.63 β = 90 c = 114.907 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-01-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.282963 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 60 98.8 0.064 39.7 12.2 49989 49989 26.564
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 94.9 0.25 5.8 6.6 4718
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.1 60 47388 47388 2545 98.87 0.16599 0.16599 0.16333 0.1656 0.21673 0.2178 RANDOM 29.166
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 1.37 -1.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.254 r_dihedral_angle_4_deg 15.131 r_dihedral_angle_3_deg 12.331 r_scangle_it 5.771 r_dihedral_angle_1_deg 5.43 r_scbond_it 3.807 r_mcangle_it 2.53 r_mcbond_it 1.591 r_angle_refined_deg 1.007 r_chiral_restr 0.072
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.254 r_dihedral_angle_4_deg 15.131 r_dihedral_angle_3_deg 12.331 r_scangle_it 5.771 r_dihedral_angle_1_deg 5.43 r_scbond_it 3.807 r_mcangle_it 2.53 r_mcbond_it 1.591 r_angle_refined_deg 1.007 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6089 Nucleic Acid Atoms Solvent Atoms 729 Heterogen Atoms 29
Software Software Software Name Purpose ADSC data collection REFMAC refinement DENZO data reduction SCALEPACK data scaling REFMAC phasing