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The chemokine binding protein of orf virus complexed with CCL7
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4P5I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 289 0.2M potassium sodium tartrate tetrahydrate, 0.1M sodium citrate tribasic dihydrate pH5.6, 2.0M ammonium citrate
Crystal Properties Matthews coefficient Solvent content 3.39 63.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.43 α = 90 b = 77.43 β = 90 c = 181.56 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93.2 CCD ADSC QUANTUM 210r 2011-08-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.95369 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.15 71.22 97.4 0.082 15.7 7.4 9921 85.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.15 3.32 82.1 0.596 2.3 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4P5I 3.15 71.22 9362 526 97.2 0.26345 0.26007 0.259 0.32727 0.3179 RANDOM 102.438
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.07 4.07 -8.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.138 r_dihedral_angle_3_deg 20.169 r_dihedral_angle_4_deg 12.469 r_dihedral_angle_1_deg 8.091 r_long_range_B_refined 6.488 r_long_range_B_other 6.487 r_scangle_other 4.769 r_mcangle_it 3.853 r_mcangle_other 3.852 r_scbond_it 3.152
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.138 r_dihedral_angle_3_deg 20.169 r_dihedral_angle_4_deg 12.469 r_dihedral_angle_1_deg 8.091 r_long_range_B_refined 6.488 r_long_range_B_other 6.487 r_scangle_other 4.769 r_mcangle_it 3.853 r_mcangle_other 3.852 r_scbond_it 3.152 r_scbond_other 3.15 r_mcbond_it 2.359 r_mcbond_other 2.357 r_angle_refined_deg 1.467 r_angle_other_deg 0.832 r_chiral_restr 0.076 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1811 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing