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Crystal structure of UDP-GlcNAc 2-epimerase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.2 M ammonium acetate, 0.1 M HEPES, pH 7.1, 19% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.15 42.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.041 α = 90 b = 98.102 β = 96.05 c = 154.722 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 0.9791 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.69 30 99.8 14.8 7.5 43536
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.69 30 41334 2183 99.44 0.19061 0.18881 0.1942 0.22509 0.2266 RANDOM 76.448
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.97 0.74 0.42 -2.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.957 r_dihedral_angle_4_deg 18.431 r_dihedral_angle_3_deg 17.096 r_dihedral_angle_1_deg 6.865 r_long_range_B_refined 6.568 r_long_range_B_other 6.555 r_scangle_other 3.783 r_mcangle_it 3.335 r_mcangle_other 3.335 r_scbond_it 2.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.957 r_dihedral_angle_4_deg 18.431 r_dihedral_angle_3_deg 17.096 r_dihedral_angle_1_deg 6.865 r_long_range_B_refined 6.568 r_long_range_B_other 6.555 r_scangle_other 3.783 r_mcangle_it 3.335 r_mcangle_other 3.335 r_scbond_it 2.33 r_scbond_other 2.33 r_mcbond_it 1.974 r_mcbond_other 1.973 r_angle_refined_deg 1.64 r_angle_other_deg 1.405 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.006 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12071 Nucleic Acid Atoms Solvent Atoms 331 Heterogen Atoms 279
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing