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Phototoxic fluorescent protein mKillerOrange
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GB3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.5 293 0.09M citric acid, pH 3.5, 22.5% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.24 45.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.16 α = 90 b = 64.16 β = 90 c = 47.35 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2015-01-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 50 98.1 0.041 0.047 0.024 12.4 3.9 29879
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.63 96 0.24 0.284 0.15 0.93 3.5 2910
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3GB3 1.57 27.8 28368 1506 98.15 0.1458 0.1443 0.1563 0.1752 0.1814 RANDOM 16.076
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.05 0.05 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.452 r_dihedral_angle_3_deg 13.068 r_dihedral_angle_4_deg 9.27 r_dihedral_angle_1_deg 6.591 r_angle_other_deg 3.756 r_angle_refined_deg 2.242 r_chiral_restr 0.171 r_gen_planes_other 0.031 r_bond_refined_d 0.023 r_gen_planes_refined 0.013
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.452 r_dihedral_angle_3_deg 13.068 r_dihedral_angle_4_deg 9.27 r_dihedral_angle_1_deg 6.591 r_angle_other_deg 3.756 r_angle_refined_deg 2.242 r_chiral_restr 0.171 r_gen_planes_other 0.031 r_bond_refined_d 0.023 r_gen_planes_refined 0.013 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1786 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 25
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data scaling MOLREP phasing HKL-2000 data scaling