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Crystal Structure of human GGT1 in complex with GGsTop inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4Z9O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.3 298 PEG3350, NH4Cl
Crystal Properties Matthews coefficient Solvent content 2.93 58.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.702 α = 90 b = 123.551 β = 90 c = 104.189 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M mirrors 2013-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.1 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.18 50 96.6 0.076 9 5.8 34573 -3 32.08
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.18 2.22 84.1 0.374 2.7 3.7 1490
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 4Z9O 2.18 47.13 32828 1715 96.36 0.1622 0.1594 0.2175 0.2021 RANDOM 40.918
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.05 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.038 r_dihedral_angle_4_deg 16.012 r_dihedral_angle_3_deg 14.398 r_dihedral_angle_1_deg 6.048 r_mcangle_it 3.426 r_scbond_it 3.381 r_mcbond_it 2.301 r_angle_refined_deg 1.396 r_chiral_restr 0.091 r_bond_refined_d 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.038 r_dihedral_angle_4_deg 16.012 r_dihedral_angle_3_deg 14.398 r_dihedral_angle_1_deg 6.048 r_mcangle_it 3.426 r_scbond_it 3.381 r_mcbond_it 2.301 r_angle_refined_deg 1.396 r_chiral_restr 0.091 r_bond_refined_d 0.01 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4046 Nucleic Acid Atoms Solvent Atoms 337 Heterogen Atoms 122
Software Software Software Name Purpose HKL-2000 data collection HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction REFMAC phasing HKL-2000 data reduction