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Structure of UbiX E49Q in complex with a covalent adduct between dimethylallyl monophosphate and reduced FMN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 297 12% PEG 3350, 150mM sodium thiocyanate, and 100mM Tris pH 7.2
Crystal Properties Matthews coefficient Solvent content 2.67 53.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.02 α = 90 b = 142.02 β = 90 c = 142.02 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-08-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.98 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.54 32.58 100 0.021 20.3 6.7 33304
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.54 1.58 100 0.266 3 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.54 32.58 33304 1756 99.92 0.14692 0.14536 0.1596 0.17604 0.1874 RANDOM 23.058
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.476 r_dihedral_angle_4_deg 17.869 r_dihedral_angle_3_deg 12.141 r_dihedral_angle_1_deg 6.383 r_long_range_B_refined 6.356 r_long_range_B_other 6.355 r_scangle_other 4.988 r_scbond_it 3.425 r_scbond_other 3.425 r_mcangle_it 2.963
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.476 r_dihedral_angle_4_deg 17.869 r_dihedral_angle_3_deg 12.141 r_dihedral_angle_1_deg 6.383 r_long_range_B_refined 6.356 r_long_range_B_other 6.355 r_scangle_other 4.988 r_scbond_it 3.425 r_scbond_other 3.425 r_mcangle_it 2.963 r_mcangle_other 2.961 r_angle_refined_deg 2.377 r_mcbond_it 2.279 r_mcbond_other 2.278 r_angle_other_deg 1.116 r_chiral_restr 0.438 r_bond_refined_d 0.026 r_gen_planes_refined 0.013 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1546 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling REFMAC phasing