☰ Navigation Tabs
Structure of A. niger Fdc1 with the prenylated-flavin cofactor in the iminium and ketimine forms.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.2 M potassium thiocyanate, Bis-Tris propane 6.5, 20 % w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.38 48.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.02 α = 90 b = 63.79 β = 90 c = 87.72 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-08-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.987 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 48.01 99.97 0.032 12.6 5.5 206025
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.13 99.99 0.378 2.1 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.1 48.01 206025 10689 99.97 0.145 0.14442 0.1432 0.15613 0.1576 RANDOM 10.711
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 -2.26 1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.448 r_dihedral_angle_4_deg 21.436 r_dihedral_angle_3_deg 12.234 r_mcbond_other 7.682 r_scangle_it 6.623 r_dihedral_angle_1_deg 6.388 r_rigid_bond_restr 5.158 r_scbond_it 4.883 r_angle_other_deg 4.427 r_mcangle_it 3.198
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.448 r_dihedral_angle_4_deg 21.436 r_dihedral_angle_3_deg 12.234 r_mcbond_other 7.682 r_scangle_it 6.623 r_dihedral_angle_1_deg 6.388 r_rigid_bond_restr 5.158 r_scbond_it 4.883 r_angle_other_deg 4.427 r_mcangle_it 3.198 r_angle_refined_deg 2.485 r_mcbond_it 2.452 r_chiral_restr 0.202 r_bond_refined_d 0.028 r_gen_planes_other 0.023 r_gen_planes_refined 0.018 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3834 Nucleic Acid Atoms Solvent Atoms 471 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing