X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1MIF 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP295Tris, ammonium sulfate, isopropanol
Crystal Properties
Matthews coefficientSolvent content
3.5765.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 94.97α = 90
b = 105.96β = 90
c = 106.72γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-10-31MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29A1.0809NSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0575.299.90.10166.968188

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1MIF2.0547.6664645345099.860.169280.167360.20534RANDOM18.268
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.010.01-0.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.357
r_dihedral_angle_4_deg17
r_dihedral_angle_3_deg11.511
r_dihedral_angle_1_deg6.332
r_long_range_B_refined5.835
r_long_range_B_other5.833
r_scangle_other4.258
r_scbond_it3.48
r_scbond_other3.469
r_angle_other_deg2.676
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.357
r_dihedral_angle_4_deg17
r_dihedral_angle_3_deg11.511
r_dihedral_angle_1_deg6.332
r_long_range_B_refined5.835
r_long_range_B_other5.833
r_scangle_other4.258
r_scbond_it3.48
r_scbond_other3.469
r_angle_other_deg2.676
r_angle_refined_deg2.261
r_mcangle_it2.014
r_mcangle_other2.013
r_mcbond_it1.431
r_mcbond_other1.431
r_chiral_restr0.165
r_bond_refined_d0.022
r_gen_planes_refined0.02
r_bond_other_d0.005
r_gen_planes_other0.004
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5216
Nucleic Acid Atoms
Solvent Atoms421
Heterogen Atoms123

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing