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CW-type zinc finger of ZCWPW2 with F78D mutation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4O62 PDB entry 4O62
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 2 M ammonium sulfate, 2% PEG400, 0.1 M HEPES sodium
Crystal Properties Matthews coefficient Solvent content 2.27 45.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.569 α = 90 b = 47.569 β = 90 c = 48.96 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2014-05-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 31.52 99.8 0.032 0.011 1 56.2 10.1 9271
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.6 97.4 0.203 0.068 0.99 13.3 9.5 434
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 4O62 1.57 30 9268 455 99.74 0.1648 0.1637 0.1749 0.1863 0.1934 RANDOM 16.017
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.09 0.17 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.119 r_dihedral_angle_4_deg 20.334 r_dihedral_angle_3_deg 9.268 r_dihedral_angle_1_deg 5.768 r_mcangle_it 2.528 r_angle_refined_deg 1.729 r_mcbond_other 1.668 r_mcbond_it 1.666 r_angle_other_deg 1.003 r_chiral_restr 0.111
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.119 r_dihedral_angle_4_deg 20.334 r_dihedral_angle_3_deg 9.268 r_dihedral_angle_1_deg 5.768 r_mcangle_it 2.528 r_angle_refined_deg 1.729 r_mcbond_other 1.668 r_mcbond_it 1.666 r_angle_other_deg 1.003 r_chiral_restr 0.111 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 458 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms 11
Software Software Software Name Purpose Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data scaling Coot model building