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Bacillus subtilis 168 Bacillaene Polyketide Synthase (PKS) Cytochrome P450 PksS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3A50
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291.15 Morpheus TM screen Condition B1: 0.09 M Halogen, 0.1 M Imidazole, MES pH 6.5, 30% P550MME-P20K
Crystal Properties Matthews coefficient Solvent content 2.69 54.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.81 α = 90 b = 66.69 β = 107.68 c = 74.54 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 46.65 99.9 0.088 10.3 5.7 98866
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3A50 1.35 46.5 93691 4920 99.85 0.18395 0.18253 0.1854 0.21087 0.2129 RANDOM 19.476
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.19 r_dihedral_angle_4_deg 15.67 r_dihedral_angle_3_deg 12.221 r_long_range_B_refined 6.313 r_long_range_B_other 6.238 r_dihedral_angle_1_deg 5.502 r_scangle_other 5.189 r_scbond_other 3.608 r_scbond_it 3.606 r_mcangle_it 2.806
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.19 r_dihedral_angle_4_deg 15.67 r_dihedral_angle_3_deg 12.221 r_long_range_B_refined 6.313 r_long_range_B_other 6.238 r_dihedral_angle_1_deg 5.502 r_scangle_other 5.189 r_scbond_other 3.608 r_scbond_it 3.606 r_mcangle_it 2.806 r_mcangle_other 2.806 r_angle_refined_deg 2.393 r_mcbond_it 2.014 r_mcbond_other 2.009 r_angle_other_deg 1.179 r_chiral_restr 0.162 r_bond_refined_d 0.028 r_gen_planes_refined 0.014 r_gen_planes_other 0.004 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3142 Nucleic Acid Atoms Solvent Atoms 308 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement Coot model building SCALA data scaling PHASER phasing iMOSFLM data reduction