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Crystal Structure of Stearoyl-Coenzyme A Desaturase 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 6.9 298 35% PEG400, 200 mM sodium chloride, 4% ethylene glycol, 100 mM MES, pH 6.9 2 LIPIDIC CUBIC PHASE 6.9 298 35% PEG400, 200 mM sodium chloride, 4% ethylene glycol, 100 mM MES, pH 6.9
Crystal Properties Matthews coefficient Solvent content 4.13 70.2 4.13 70.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.061 α = 90 b = 113.766 β = 90 c = 141.698 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 PIXEL DECTRIS PILATUS 6M-F 2013-11-18 M SINGLE WAVELENGTH 2 2 x-ray 93 PIXEL DECTRIS PILATUS 6M-F 2014-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9795 APS 24-ID-C 2 SYNCHROTRON APS BEAMLINE 24-ID-C 1.2541 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 98 0.111 0.121 0.047 0.992 6.9 6.2 38065 43.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.64 94 0.53 0.588 0.248 0.827 5 1813
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.605 47.411 1.36 38016 1999 97.94 0.2044 0.2027 0.209 0.2353 0.2385 Random selection 46.8574
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.087 f_angle_d 0.633 f_chiral_restr 0.03 f_bond_d 0.002 f_plane_restr 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5231 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 188
Software Software Software Name Purpose PHENIX refinement XDS data scaling Aimless data scaling SHELXDE phasing PHASER phasing HKL-2000 data scaling Coot model building PDB_EXTRACT data extraction