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Crystal structure of ribosomal oxygenase NO66 dimer mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 1.0M ammonium monohydric phosphate, 0.1M acetate pH4.5
Crystal Properties Matthews coefficient Solvent content 4.34 71.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.06 α = 90 b = 144.21 β = 90 c = 144.21 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9791 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 64.58 98.8 0.101 12.4 6.2 27284
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.48 98 0.613 3 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.3 50 25870 1372 98.48 0.21973 0.21708 0.27096 0.252 RANDOM 99.441
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.98 -1.08 2.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.867 r_dihedral_angle_4_deg 23.304 r_dihedral_angle_3_deg 19.54 r_long_range_B_refined 13.871 r_long_range_B_other 13.871 r_scangle_other 10.919 r_mcangle_it 10.475 r_mcangle_other 10.474 r_scbond_it 7.117 r_scbond_other 7.116
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.867 r_dihedral_angle_4_deg 23.304 r_dihedral_angle_3_deg 19.54 r_long_range_B_refined 13.871 r_long_range_B_other 13.871 r_scangle_other 10.919 r_mcangle_it 10.475 r_mcangle_other 10.474 r_scbond_it 7.117 r_scbond_other 7.116 r_mcbond_other 6.948 r_mcbond_it 6.946 r_dihedral_angle_1_deg 6.878 r_angle_refined_deg 1.62 r_angle_other_deg 0.848 r_chiral_restr 0.08 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.005 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7072 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement MOSFLM data processing PHASER phasing Coot model building