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Crystal Structure of SLMO1-TRIAP1 Complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4XZS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 100 mM sodium formate, 12% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.29 46.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.62 α = 87.25 b = 80.68 β = 85.62 c = 98.02 γ = 89.92
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.98000 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.58 97.62 98.9 0.108 11.6 3.5 28326
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.58 3.67 97.5 0.544 2.7 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4XZS 3.58 97.62 26826 1499 98.93 0.27528 0.27342 0.2698 0.30927 0.3038 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.48 -1.88 -3.17 0.03 0.34 -5.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.912 r_dihedral_angle_4_deg 19.14 r_dihedral_angle_3_deg 15.251 r_long_range_B_refined 9.882 r_long_range_B_other 9.882 r_dihedral_angle_1_deg 5.912 r_scangle_other 5.282 r_mcangle_it 5.061 r_mcangle_other 5.061 r_angle_other_deg 3.589
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.912 r_dihedral_angle_4_deg 19.14 r_dihedral_angle_3_deg 15.251 r_long_range_B_refined 9.882 r_long_range_B_other 9.882 r_dihedral_angle_1_deg 5.912 r_scangle_other 5.282 r_mcangle_it 5.061 r_mcangle_other 5.061 r_angle_other_deg 3.589 r_scbond_it 3.106 r_scbond_other 3.106 r_mcbond_it 2.945 r_mcbond_other 2.945 r_angle_refined_deg 1.663 r_chiral_restr 0.081 r_bond_refined_d 0.011 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17156 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 92
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing