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Crystal structure at room temperature of hen-egg lysozyme in complex with benzamidine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 NaOAc 100mM
,4% (w/v) NaCl
Crystal Properties Matthews coefficient Solvent content 2.09 41.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.292 α = 90 b = 79.292 β = 90 c = 38.073 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 315r 2014-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.9797 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 38.1 99.5 2.5 4.3 21988
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.35 38.1 21988 1285 94.95 0.1397 0.1383 0.1655 0.1721 RANDOM 17.371
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.13 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.08 r_sphericity_free 20.807 r_dihedral_angle_4_deg 19.505 r_dihedral_angle_3_deg 12.874 r_sphericity_bonded 5.91 r_dihedral_angle_1_deg 5.682 r_rigid_bond_restr 1.918 r_mcangle_it 1.673 r_mcbond_it 1.306 r_mcbond_other 1.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.08 r_sphericity_free 20.807 r_dihedral_angle_4_deg 19.505 r_dihedral_angle_3_deg 12.874 r_sphericity_bonded 5.91 r_dihedral_angle_1_deg 5.682 r_rigid_bond_restr 1.918 r_mcangle_it 1.673 r_mcbond_it 1.306 r_mcbond_other 1.301 r_angle_refined_deg 1.239 r_angle_other_deg 0.857 r_chiral_restr 0.084 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms 9
Software Software Software Name Purpose XDS data reduction REFMAC refinement PDB_EXTRACT data extraction SCALA data scaling MOLREP phasing