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Crystal structure of an octadecameric TF55 complex from S. solfataricus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KO1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 HEPES-Na, sodium formate, TMAO
Crystal Properties Matthews coefficient Solvent content 3.41 63.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.36 α = 90 b = 163.36 β = 90 c = 327.29 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-09-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.95370 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.78 65.38 99.4 0.33 0.142 0.995 5.2 6.4 48892
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.78 3.91 93.6 2.255 0.992 0.378 0.9 6.1 4186
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3ko1 3.79 64.93 3645 71.32 0.2438 0.2396 0.2345 0.2794 0.2675 RANDOM 176.892
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -28.33 -28.33 56.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.966 r_dihedral_angle_3_deg 15.968 r_mcangle_it 13.079 r_dihedral_angle_4_deg 11.887 r_mcbond_it 7.58 r_mcbond_other 7.58 r_dihedral_angle_1_deg 4.481 r_angle_other_deg 1.075 r_angle_refined_deg 0.978 r_chiral_restr 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.966 r_dihedral_angle_3_deg 15.968 r_mcangle_it 13.079 r_dihedral_angle_4_deg 11.887 r_mcbond_it 7.58 r_mcbond_other 7.58 r_dihedral_angle_1_deg 4.481 r_angle_other_deg 1.075 r_angle_refined_deg 0.978 r_chiral_restr 0.05 r_bond_refined_d 0.006 r_bond_other_d 0.005 r_gen_planes_refined 0.004 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22955 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 162
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction Aimless data scaling PHASER phasing