☰ Navigation Tabs
MycF mycinamicin III 3'-O-methyltransferase (E35Q, M56A, E139A variant) in complex with Mg, SAH and mycinamicin VI (MycE substrate)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293.1 20-30% PEG 5000 MME, 100 mM ammonium acetate, and 100 mM BisTrisPropane pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.4 48.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.269 α = 90 b = 91.747 β = 90 c = 127.774 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.033 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 50 98.5 12.9 6.6 79006
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.59 50 75134 3860 98.52 0.16925 0.16826 0.1816 0.18833 0.1963 RANDOM 20.192
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.02 1.25 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.115 r_dihedral_angle_4_deg 16.59 r_dihedral_angle_3_deg 12.525 r_dihedral_angle_1_deg 5.634 r_long_range_B_other 5.49 r_long_range_B_refined 5.489 r_scangle_other 2.193 r_scbond_it 1.38 r_scbond_other 1.38 r_angle_refined_deg 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.115 r_dihedral_angle_4_deg 16.59 r_dihedral_angle_3_deg 12.525 r_dihedral_angle_1_deg 5.634 r_long_range_B_other 5.49 r_long_range_B_refined 5.489 r_scangle_other 2.193 r_scbond_it 1.38 r_scbond_other 1.38 r_angle_refined_deg 1.31 r_mcangle_it 1.155 r_mcangle_other 1.155 r_angle_other_deg 0.799 r_mcbond_it 0.709 r_mcbond_other 0.709 r_chiral_restr 0.08 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3958 Nucleic Acid Atoms Solvent Atoms 487 Heterogen Atoms 164
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing