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MycF mycinamicin III 3'-O-methyltransferase (E35Q, M56A, E139A variant) in complex with Mg and SAH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293.1 20-30% PEG 5000 MME, 100 mM ammonium acetate, 100 mM BisTrisPropane pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.37 48.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.386 α = 90 b = 89.926 β = 90 c = 128.669 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-02-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.033 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 85.5 12.9 6.5 99384
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.4 50 94452 4926 85.48 0.16325 0.1623 0.1612 0.1814 0.1799 RANDOM 19.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.99 1.65 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.767 r_dihedral_angle_4_deg 14.347 r_dihedral_angle_3_deg 11.549 r_long_range_B_refined 5.827 r_dihedral_angle_1_deg 5.754 r_long_range_B_other 5.54 r_scangle_other 1.705 r_angle_refined_deg 1.24 r_scbond_it 1.073 r_scbond_other 1.073
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.767 r_dihedral_angle_4_deg 14.347 r_dihedral_angle_3_deg 11.549 r_long_range_B_refined 5.827 r_dihedral_angle_1_deg 5.754 r_long_range_B_other 5.54 r_scangle_other 1.705 r_angle_refined_deg 1.24 r_scbond_it 1.073 r_scbond_other 1.073 r_mcangle_it 1.051 r_mcangle_other 1.051 r_angle_other_deg 0.794 r_mcbond_it 0.631 r_mcbond_other 0.631 r_chiral_restr 0.074 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3958 Nucleic Acid Atoms Solvent Atoms 496 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing