X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4X3O 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP30025% PEG 3350, 0.1M HEPES, 5% Glycerol
Crystal Properties
Matthews coefficientSolvent content
2.3848.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 37.606α = 90
b = 77.7β = 97.73
c = 56.473γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2014-05-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U0.97930SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.85099.50.0730.0860.04511.13.729676
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.861000.4890.5770.3020.753.72964

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4X3O1.830.4828100150399.050.1550.1540.1732RANDOM22.59
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.26-0.51-1.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.21
r_dihedral_angle_4_deg17.817
r_dihedral_angle_3_deg12.155
r_dihedral_angle_1_deg5.727
r_mcangle_it1.898
r_angle_refined_deg1.446
r_angle_other_deg1.368
r_mcbond_it1.137
r_mcbond_other1.122
r_chiral_restr0.267
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.21
r_dihedral_angle_4_deg17.817
r_dihedral_angle_3_deg12.155
r_dihedral_angle_1_deg5.727
r_mcangle_it1.898
r_angle_refined_deg1.446
r_angle_other_deg1.368
r_mcbond_it1.137
r_mcbond_other1.122
r_chiral_restr0.267
r_bond_refined_d0.013
r_bond_other_d0.007
r_gen_planes_refined0.006
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2403
Nucleic Acid Atoms
Solvent Atoms257
Heterogen Atoms63

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PDB_EXTRACTdata extraction
PHASERphasing