X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4WZU 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72890.22 M malonate, 18% (w/v) PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.754.47

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.763α = 90.06
b = 86.98β = 89.96
c = 157.342γ = 90.08
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rMirrors2012-06-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9792APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.22796.40.0618.61.9161089
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.2486.70.2941.87262

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4WZU2.226.7151987820495.940.17490.17350.2006RANDOM44.895
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-26.046.232.17-16.4914.4942.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.666
r_dihedral_angle_4_deg16.499
r_dihedral_angle_3_deg12.788
r_dihedral_angle_1_deg6.129
r_mcangle_it2.353
r_mcbond_it1.517
r_mcbond_other1.517
r_angle_refined_deg1.307
r_angle_other_deg1.006
r_chiral_restr0.073
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.666
r_dihedral_angle_4_deg16.499
r_dihedral_angle_3_deg12.788
r_dihedral_angle_1_deg6.129
r_mcangle_it2.353
r_mcbond_it1.517
r_mcbond_other1.517
r_angle_refined_deg1.307
r_angle_other_deg1.006
r_chiral_restr0.073
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_bond_other_d0.005
r_gen_planes_other0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms21431
Nucleic Acid Atoms
Solvent Atoms725
Heterogen Atoms220

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
MOLREPphasing
PDB_EXTRACTdata extraction
HKL-3000data scaling