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Crystal structure of human adenovirus 8 protease with an irreversible vinyl sulfone inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.2M Na citrate, 20% w/v PEG3350, 5 mg/ml protein, 2 mM inhibitor
Crystal Properties Matthews coefficient Solvent content 2 38.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.733 α = 90 b = 41.733 β = 90 c = 193.552 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 36.15 86.3 0.054 0.062 15.86 3.66 17707 -3 27.206
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.21 59.4 0.27 0.328 2.65
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 36.14 15394 817 79 0.2139 0.2101 0.2172 0.2857 0.2851 RANDOM 36.819
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 11.95 11.95 -23.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.51 r_dihedral_angle_4_deg 19.965 r_dihedral_angle_3_deg 19.164 r_dihedral_angle_1_deg 8.146 r_mcangle_it 4.732 r_scbond_it 3.768 r_mcbond_it 3.362 r_angle_refined_deg 2.051 r_chiral_restr 0.129 r_bond_refined_d 0.015
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.51 r_dihedral_angle_4_deg 19.965 r_dihedral_angle_3_deg 19.164 r_dihedral_angle_1_deg 8.146 r_mcangle_it 4.732 r_scbond_it 3.768 r_mcbond_it 3.362 r_angle_refined_deg 2.051 r_chiral_restr 0.129 r_bond_refined_d 0.015 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3394 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 68
Software Software Software Name Purpose XDS data reduction REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling PHASER phasing