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UndA complexed with 2,3-dodecenoic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.1 M MES, 1.8 M ammonium sulfate, 0.2 mM iron(II) ammonium sulfate, pH 6.5-7.0
Crystal Properties Matthews coefficient Solvent content 3 59.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.48 α = 90 b = 74.16 β = 90 c = 142.5 γ = 90
Symmetry Space Group P 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 74.16 97 8.1 6.7 63640
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 94.9 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 74.16 62224 3348 97.72 0.16133 0.158 0.1695 0.22534 0.2302 RANDOM 34.572
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.83 -1.12
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.123 r_dihedral_angle_2_deg 37.076 r_dihedral_angle_4_deg 17.536 r_sphericity_bonded 13.793 r_dihedral_angle_3_deg 13.543 r_rigid_bond_restr 10.154 r_long_range_B_refined 6.89 r_long_range_B_other 6.235 r_scangle_other 5.559 r_scbond_it 5.115
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.123 r_dihedral_angle_2_deg 37.076 r_dihedral_angle_4_deg 17.536 r_sphericity_bonded 13.793 r_dihedral_angle_3_deg 13.543 r_rigid_bond_restr 10.154 r_long_range_B_refined 6.89 r_long_range_B_other 6.235 r_scangle_other 5.559 r_scbond_it 5.115 r_dihedral_angle_1_deg 5.088 r_mcangle_other 4.993 r_mcangle_it 4.987 r_scbond_other 4.855 r_mcbond_other 3.979 r_mcbond_it 3.975 r_angle_other_deg 3.586 r_angle_refined_deg 1.337 r_chiral_restr 0.11 r_bond_refined_d 0.01 r_gen_planes_other 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4170 Nucleic Acid Atoms Solvent Atoms 494 Heterogen Atoms 90
Software Software Software Name Purpose REFMAC refinement PHENIX refinement MOSFLM data reduction SCALA data scaling