☰ Navigation Tabs
High-resolution structure of the Co-bound form of the Y135F mutant of C. metallidurans CnrXs
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 PEG 3350, HEPES, NaH2P04/KH2PO4
Crystal Properties Matthews coefficient Solvent content 1.94 36.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.42 α = 90 b = 32.42 β = 90 c = 196.1 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.979725 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.11 20 99.2 0.103 0.11 12.29 7.9 78323 -3 11.253
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.11 1.18 95.6 0.596 0.639 3.77
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 19.79 40322 1430 99.87 0.1326 0.1304 0.1311 0.1716 0.1736 RANDOM 12.327
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.06 0.13
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 36.251 r_dihedral_angle_2_deg 26.229 r_dihedral_angle_4_deg 19.191 r_dihedral_angle_3_deg 12.432 r_sphericity_bonded 10.676 r_dihedral_angle_1_deg 4.137 r_rigid_bond_restr 1.966 r_mcangle_it 1.739 r_mcbond_it 1.484 r_mcbond_other 1.483
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 36.251 r_dihedral_angle_2_deg 26.229 r_dihedral_angle_4_deg 19.191 r_dihedral_angle_3_deg 12.432 r_sphericity_bonded 10.676 r_dihedral_angle_1_deg 4.137 r_rigid_bond_restr 1.966 r_mcangle_it 1.739 r_mcbond_it 1.484 r_mcbond_other 1.483 r_angle_refined_deg 1.457 r_angle_other_deg 0.853 r_chiral_restr 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 882 Nucleic Acid Atoms Solvent Atoms 260 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction