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Crystal structure of the Staphylococcus aureus SasG G52-E2-G53 module
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TIP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.2 M magnesium chloride, 0.1 M HEPES, 30% PEG400, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.25 45.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.861 α = 84.76 b = 45.628 β = 83.22 c = 60.359 γ = 78.6
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-02-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 59.79 98.9 0.089 0.05 0.992 15.8 4.3 53868 14.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 97.9 0.511 0.278 0.929 4.6 4.3 2631
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3TIP 1.6 59.79 50959 2694 98.47 0.2093 0.2071 0.2192 0.249 0.22 RANDOM 25.569
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.79 0.42 0.05 -0.28 1.2 -1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.102 r_dihedral_angle_4_deg 18.902 r_dihedral_angle_3_deg 12.539 r_dihedral_angle_1_deg 6.053 r_mcangle_it 2.007 r_angle_refined_deg 1.725 r_mcbond_other 1.347 r_mcbond_it 1.346 r_angle_other_deg 1.115 r_chiral_restr 0.101
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.102 r_dihedral_angle_4_deg 18.902 r_dihedral_angle_3_deg 12.539 r_dihedral_angle_1_deg 6.053 r_mcangle_it 2.007 r_angle_refined_deg 1.725 r_mcbond_other 1.347 r_mcbond_it 1.346 r_angle_other_deg 1.115 r_chiral_restr 0.101 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3170 Nucleic Acid Atoms Solvent Atoms 257 Heterogen Atoms 1
Software Software Software Name Purpose XDS data reduction Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing