X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2RJG 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72910.1 M HEPES pH 7.0, 1.6 M ammonium sulfate
Crystal Properties
Matthews coefficientSolvent content
3.3162.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 148.079α = 90
b = 148.079β = 90
c = 163.689γ = 120
Symmetry
Space GroupP 6

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110IMAGE PLATEMAR scanner 345 mm plate2014-10-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8619.7299.60.99818.522.1168143
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.861.993.80.6321.916.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2RJG1.919.72149471998199.880.176860.175140.20371RANDOM22.793
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.381
r_dihedral_angle_4_deg15.929
r_dihedral_angle_3_deg15.118
r_dihedral_angle_1_deg6.335
r_long_range_B_refined3.367
r_long_range_B_other3.367
r_scangle_other1.924
r_mcangle_it1.73
r_mcangle_other1.73
r_angle_refined_deg1.349
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.381
r_dihedral_angle_4_deg15.929
r_dihedral_angle_3_deg15.118
r_dihedral_angle_1_deg6.335
r_long_range_B_refined3.367
r_long_range_B_other3.367
r_scangle_other1.924
r_mcangle_it1.73
r_mcangle_other1.73
r_angle_refined_deg1.349
r_scbond_it1.197
r_scbond_other1.197
r_mcbond_it1.093
r_mcbond_other1.093
r_angle_other_deg0.795
r_chiral_restr0.075
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10920
Nucleic Acid Atoms
Solvent Atoms467
Heterogen Atoms103

Software

Software
Software NamePurpose
REFMACrefinement