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Structure of human ALDH1A1 with inhibitor CM053
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 298 PEG3350, sodium chloride, 100mM Bis Tris, ytterbium chloride, sitting drop, Ligand soak overnight
Crystal Properties Matthews coefficient Solvent content 2.26 45.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.095 α = 90 b = 109.095 β = 90 c = 83.256 γ = 90
Symmetry Space Group P 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2014-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.98 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99 0.11 18.3 9.3 35048
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 1.98 100 0.66 3.7 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.95 50 35048 1837 99.23 0.19668 0.19428 0.2005 0.24301 0.2424 RANDOM 38.658
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 1.06 -2.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.449 r_dihedral_angle_4_deg 17.437 r_dihedral_angle_3_deg 13.909 r_dihedral_angle_1_deg 5.857 r_long_range_B_refined 4.91 r_long_range_B_other 4.847 r_scangle_other 1.814 r_scbond_it 1.735 r_scbond_other 1.734 r_mcangle_other 1.292
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.449 r_dihedral_angle_4_deg 17.437 r_dihedral_angle_3_deg 13.909 r_dihedral_angle_1_deg 5.857 r_long_range_B_refined 4.91 r_long_range_B_other 4.847 r_scangle_other 1.814 r_scbond_it 1.735 r_scbond_other 1.734 r_mcangle_other 1.292 r_mcangle_it 1.291 r_angle_refined_deg 1.287 r_mcbond_it 0.813 r_mcbond_other 0.808 r_angle_other_deg 0.746 r_chiral_restr 0.074 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3785 Nucleic Acid Atoms Solvent Atoms 189 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement