4WOJ

Aspartate Semialdehyde Dehydrogenase from Francisella tularensis


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1T4B 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52980.2 M Ammonium Sulfate, 0.1 M Tris pH 8.5, 25% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.0740.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.587α = 115.43
b = 60.573β = 100.98
c = 67.684γ = 91.74
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210r2014-06-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97935APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.454097.40.0540.0540.0760.05413.71.92349823498-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.452.4994.30.2010.2840.2010.9053.31.81138

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1T4B2.4537.2222134118097.370.18630.18340.2376RANDOM37.408
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.031.57-2.154.78-0.21-1.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.752
r_dihedral_angle_4_deg20.697
r_dihedral_angle_3_deg17.015
r_dihedral_angle_1_deg6.202
r_angle_refined_deg1.526
r_angle_other_deg1.01
r_chiral_restr0.087
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_bond_other_d0.006
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.752
r_dihedral_angle_4_deg20.697
r_dihedral_angle_3_deg17.015
r_dihedral_angle_1_deg6.202
r_angle_refined_deg1.526
r_angle_other_deg1.01
r_chiral_restr0.087
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_bond_other_d0.006
r_gen_planes_other0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5653
Nucleic Acid Atoms
Solvent Atoms112
Heterogen Atoms16

Software

Software
Software NamePurpose
HKL-3000data collection
HKL-3000data scaling
HKL-2000data scaling
MOLREPphasing
REFMACrefinement
Cootmodel building
PDB_EXTRACTdata extraction